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Table 2 Functional mutations (INDEL or SNVs) fixed in one of the rabbit lines and absent in the other line

From: Selection for environmental variance of litter size in rabbits involves genes in pathways controlling animal resilience

OCUa bpb Lowc Highd Region Gene Mutationh
9 48,280,960 1/1 2/2 3ʹUTR MC2R 3-bp deletioni
11 56,199,847 0/0e 1/1f Frameshift TTC23L 2-bp deletion
12 138,684,799 1/1 0/0 Frameshift ENSOCUG00000031631 2-bp deletion
12 138,685,173 1/1 0/0 Frameshift ENSOCUG00000031631 1-bp insertion
12 138,685,179 1/1 0/0 Frameshift ENSOCUG00000031631 2-bp deletion
14 33,195,918 1/1 2/2g 3ʹUTR ENSOCUG00000006264 25-bp deletioni
15 4,723,998 1/1 0/0 3ʹUTR SLC18A1 4-bp deletion
19 40,686,575 0/0 1/1 5ʹUTR FBXL20 90-bp insertion
19 43,006,505 0/0 1/1 Frameshift GHDC 2-bp deletion
19 44,276,359 1/1 0/0 3ʹUTR CD300LG 8-bp deletion
  1. aOryctolagus cuniculus (OCU) chromosome
  2. bFunctional mutation location in base pairs
  3. cGenotype of line with low VE of LS
  4. dGenotype of line with high VE of LS
  5. e0/0 indicates that the functional mutation is the homozygous for the reference allele
  6. f1/1 indicates that the functional mutation is homozygous for the alternative allele
  7. g2/2 indicates that the functional mutation is homozygous for a new allele not present in the reference genome
  8. hAll INDELs were marked according to the reference allele of OryCun v2.0.103
  9. iWith reference to the alternative allele of OryCun v2.0.103