You are viewing the site in preview mode

Skip to main content

Table 1 Genome windows identified by the HP analysis on different porcine chromosomes (SSC) and shared by four or more pig breeds

From: Whole-genome sequencing of European autochthonous and commercial pig breeds allows the detection of signatures of selection for adaptation of genetic resources to different breeding and production systems

Genome windows (SSC: start–end bp)Number of windowsPig populationsNumber of SNPsAnnotated genes (± 200 kb)
1:170,300,001:170,400,0011Apulo-Calabrese, Casertana, Krškopolje, Majorcan Black829–
4:42,900,001:43,000,0011Black Slavonian, Nero Siciliano, Krškopolje, Gascon683TMEM67a, PDP1b, FAM92Ac, RBM12Bc
4:75,500,001:75,900,0014Cinta Senese, Apulo Calabrese, Krškopolje, Lithuanian White old type, Sarda, Italian Large White, Italian Landrace2356CHCHD7c, SDR16C5d, MOSc, PENKc, TMEM68d, LOC100626876c, TGS1d, LYNc, LOC106510084c, PLAG1a, XKR4d
8:12,900,001:13,0000011Bísara, Schwäbisch-Hällisches Schwein, Italian Large White, Italian Landrace, Majorcan Black1067NCAPGb, CAF16d, FAM184Bd, LCORLa
8:42,600,001:42,700,0011Bísara, Lithuanian White old type, Italian Large White, Italian Landrace683LOC102162630d, LOC100526059d, MAP9a, TLL1d, LOC100620475c
8:45,500,001:45,600,0011Bísara, Lithuanian White old type, Italian Large White, Italian Landrace1482PDGFCa
  1. aGenes affecting or associated to several traits and within the reported windows
  2. bGenes affecting or associated to several traits
  3. cOther genes within the reported windows
  4. dOther listed genes are ± 200 kb upstream or downstream the reported windows
Back to article page

Genetics Selection Evolution

ISSN: 1297-9686