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Table 4 Previously reported QTL for reproduction and health trait in the horse that overlap with common (> 95% of the sample) ROH regions in the Norwegian–Swedish Coldblooded Trotter

From: Genomic measures of inbreeding in the Norwegian–Swedish Coldblooded Trotter and their associations with known QTL for reproduction and health traits

QTL ID Symbol Trait name Chr Start position (bp) End position (bp)
103450 MOTSCT Number of motile sperm 1 53958169 53958209
32144 OSTEO Osteochondrosis 2 11816213 21391792
32142 OSTEO Osteochondrosis 2 12910010 21391792
32146 OSTEO Osteochondrosis 2 12910010 21391792
32145 OSTD Osteochondrosis dissecans 2 13028376 22500086
32143 OSTEO Osteochondrosis 2 18664801 19717761
32147 OSTEO Osteochondrosis 2 18664801 23235964
29325 OSTEO Osteochondrosis 3 105163057 105163097
29326 OSTEO Osteochondrosis 3 105546982 105547022
29327 OSTEO Osteochondrosis 3 105830605 105830645
29306 SUSBITE Insect bite hypersensitivity 4 43000811 43945687
37902 OSTD Osteochondrosis dissecans 5 77424966 77425006
29287 SUSBITE Insect bite hypersensitivity 11 22016942 22985500
29268 RHOD Rhodococcus equi infection 14 3055253 3055293
29315 SUSBITE Insect bite hypersensitivity 15 20012397 20994475
29316 SUSBITE Insect bite hypersensitivity 15 32000266 32987009
29035 GPT Guttural pouch tympany 15 53093059 53093099
29111 GPT Guttural pouch tympany 15 65298904 65298944
29067 GPT Guttural pouch tympany 15 78013499 78013539
28922 OSTEO Osteochondrosis 16 1299549 5389006
29002 OSTD Osteochondrosis dissecans 16 1299549 5389006
28933 OSTEO Osteochondrosis 16 5228939 5496903
28999 OSTD Osteochondrosis dissecans 16 5228939 5496903
28927 OSTD Osteochondrosis dissecans 16 22275834 22702331
28937 OSTEO Osteochondrosis 16 22275834 22702331
29006 OSTEO Osteochondrosis 16 22275834 22702331
29338 RER Recurrent exertional rhabdomyolysis 16 29314251 29314291
29277 RER Recurrent exertional rhabdomyolysis 16 29349222 29349262
29337 RER Recurrent exertional rhabdomyolysis 16 29349222 29349262
29320 SUSBITE Insect bite hypersensitivity 19 21037979 21977304
29298 SUSBITE Insect bite hypersensitivity 20 41031989 41982509
37895 SUSBITE Insect bite hypersensitivity 20 41530793 42603867
37896 SUSBITE Insect bite hypersensitivity 20 41530793 42603867
28920 SARRESI Equine sarcoids 23 16126529 41049320
28921 SARRESI Equine sarcoids 25 24227654 30109054
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Genetics Selection Evolution

ISSN: 1297-9686